Description
Compute the r2 correlation between imputed dosages (in MAF bins) and highly-confident genotype calls from the high-coverage dataset.
Input
Name
Description
Pattern
Minimum coverage in validation data. If FORMAT/DP is missing and --minDP > 0, the program exits with an error.
Tools
glimpse Documentation
GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies.