Description

GMM-Demux is a Gaussian-Mixture-Model-based software for processing sample barcoding data (cell hashing and MULTI-seq).

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

type_report (boolean)

If true, full classification report is generated, otherwise the simplified classification report.

summary_report (boolean)

If true, summary report is generated.

skip (file)

Load a full classification report and skip the mtx folder as input. Require a path argument.

examine (file)

Provide the cell list. Requires a file argument. Only executes if -u is set.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

gmmdemux Documentation

GMM-Demux is a Gaussian-Mixture-Model-based software for processing sample barcoding data (cell hashing and MULTI-seq).

https://github.com/CHPGenetics/GMM-demuxdoi: 10.1186/s13059-020-02084-2License: MIT
Authors