Description

Re-organise a fasta index into a preffered GenomeNote order

Input

Name
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

index (file)

FAI or Sizes index files

Output

Name
Description
Pattern

tsv

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

*.tsv (file)

A TSV of re-ordered scaffold names

versions_gnkfastasort

${task.process} (string)

The name of the process

gnk_fastasort (string)

The name of the module

fastasort -v | sed 's/fastasort. //g' (eval)

The expression to obtain the version of the tool

Topics

Name
Description
Pattern

versions

${task.process} (string)

The name of the process

gnk_fastasort (string)

The name of the module

fastasort -v | sed 's/fastasort. //g' (eval)

The expression to obtain the version of the tool

Tools

gnk_fastasort Documentation

Re-organise a fasta index into a preffered GenomeNote order

License: MIT
Authors