Description

Tools for population-scale genotyping using pangenome graphs.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

1 ()

0 ()

1 ()

region_file (file)

File with a list of chromosome/locations in reference genome to genotype. One region per line in the format :-. This or --region (in ext.args) must be specified.

*

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

graphtyper Documentation

A graph-based variant caller capable of genotyping population-scale short read data sets while incorporating previously discovered variants.

https://github.com/DecodeGenetics/graphtyperdoi: 10.1038/ng.3964License: MIT
Authors