Description

Run the preprocess step of GRIDSS to extract multiple Picard metrics (insert size, MAPQ, CIGAR, IDSV, tag and coverage metrics) from an input BAM file prior to assembly and variant calling.

Input

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Output

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Tools

gridss Documentation

GRIDSS: the Genomic Rearrangement IDentification Software Suite

https://github.com/PapenfussLab/gridssdoi: 10.1186/s13059-021-02423-xLicense: GPL v3
Authors