Description

GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

use_pplacer_scratch_dir (boolean)

Set to true to reduce pplacer memory usage by writing to disk (slower)

mash_db (file)

The local copy of the Mash sketch database used by GTDB-tk if ani_screen mode is used (optional)

*.msh

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

gtdbtk Documentation

GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB.

https://github.com/Ecogenomics/GTDBTkdoi: 10.1093/bioinformatics/btz848License: GNU General Public v3 (GPL v3)
nf-core pipelines with this module
metagenomeassembly
Authors