Description

Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions.

Input

Name
Description
Pattern

alignment (file)

fasta alignment file

*.{fasta,fas,fa,aln}

Output

Name
Description
Pattern

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Tools

gubbins Documentation

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

Authors