Description

Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions.

Input

Name
Description
Pattern

0 ()

Output

Name
Description
Pattern

fasta ()

gff ()

vcf ()

stats ()

phylip ()

embl_predicted ()

embl_branch ()

tree ()

tree_labelled ()

versions ()

Tools

gubbins Documentation

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

Authors