Description
Fast, JIT-compiled k-mer counter supporting both contiguous and gapped k-mers using multi-way bucketed Cuckoo hash tables.
Tools
hackgap Documentation
hackgap (hash-based counting of k-mers with gaps) provides a fast jit-compiled k-kmer counter which supports gapped k-mers.
doi: 10.4230/LIPICS.WABI.2022.12License: MIT
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