Description

The hap-ibd program detects identity-by-descent (IBD) segments and homozygosity-by-descent (HBD) segments in phased genotype data. The hap-ibd program can analyze data sets with hundreds of thousands of samples.

Input

Name
Description
Pattern

0 ()

1 ()

map (file)

genetic map with cM units in PLINK format

*.{map,map.gz,map.zip}

exclude (file)

text file containing samples one sample per line to be excluded from the analysis

*.*

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

hapibd Documentation

Hap-ibd Detects identity-by-descent (IBD) segments and homozygosity-by-descent (HBD) segments in phased genotype data.

doi: 10.1016/j.ajhg.2020.02.010License: Apache-2.0
Authors