Description

Haplocheck detects contamination patterns in mtDNA AND WGS sequencing studies by analyzing the mitochondrial DNA. Haplocheck also works as a proxy tool for nDNA studies and provides users a graphical report to investigate the contamination further. Internally, it uses the Haplogrep tool, that supports rCRS and RSRS mitochondrial versions.

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Tools

haplocheck Documentation

Detects in-sample contamination in mtDNA or WGS sequencing studies by analyzing the mitochondrial content.

doi: 10.1101/gr.256545.119License: MIT
Authors