Description

Hap.py is a tool to compare diploid genotypes at haplotype level. Rather than comparing VCF records row by row, hap.py will generate and match alternate sequences in a superlocus. A superlocus is a small region of the genome (sized between 1 and around 1000 bp) that contains one or more variants.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

4 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

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Output

Name
Description
Pattern

summary_csv ()

roc_all_csv ()

roc_indel_locations_csv ()

roc_indel_locations_pass_csv ()

roc_snp_locations_csv ()

roc_snp_locations_pass_csv ()

extended_csv ()

runinfo ()

metrics_json ()

vcf ()

tbi ()

versions ()

Tools

happy Documentation

Haplotype VCF comparison tools

License: BSD-2-clause
Authors