Description

HelitronScanner scanHead and scanTail tools for Helitron transposons in genomes

Input

Name
Description
Pattern

0 ()

1 ()

command (string)

Command to execute. One of [ 'head', 'tail' ]

lcv_filepath (file)

LCV file path. If not provided by setting it to [], the LCV file packaged with the module will be used

*.lcvs

buffer_size (integer)

Genome slice size (use negative or zero for non-buffer, i.e. treat every whole chromosome)

Output

Name
Description
Pattern

0 ()

0 ()

Tools

helitronscanner Documentation

HelitronScanner uncovers a large overlooked cache of Helitron transposons in many genomes

doi: 10.1073/pnas.1410068111License: GPL v3-or-later
Authors