Description

Run hifi_trimmer filter_bam to filter and trim adapter hits from PacBio HiFi reads (BAM/FASTA/FASTQ) using BLAST against adapter sequences. Primary output is filtered FASTA/FASTQ.

Input

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Output

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Tools

hifi_trimmer Documentation

hifi_trimmer: tools for processing HiFi read BLAST results and filtering/trimming read files to output processed FASTA/FASTQ and accompanying summary and hit (optional) files.

License: MIT

samtools Documentation

SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA.

doi: 10.1093/bioinformatics/btp352License: MIT
Authors