Description

Run hifi_trimmer process_blast to process a BLAST search of adapter sequences against PacBio HiFi reads. Primary output is a BED describing regions to exclude, a json of summary information, and an optional hits file.

Input

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Output

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Tools

hifi_trimmer Documentation

hifi_trimmer: tools for processing HiFi read BLAST results and filtering/trimming BAM files to output processed FASTA/FASTQ and accompanying summary and hit (optional) files.

License: MIT
Authors