Description

Run hifi-trimmer trim to filter and trim adapter-hit regions from PacBio HiFi reads. Supports BAM/CRAM/FASTA/FASTQ input and emits SAM/BAM/CRAM according to the selected output format.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

hifi-trimmer Documentation

hifi-trimmer: tools for processing HiFi read BLAST results and filtering/trimming read files.

License: MIT

samtools Documentation

SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA.

doi: 10.1093/bioinformatics/btp352License: MIT
Authors