Description

Builds HISAT2 index for reference genome

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

hisat2_memory_input (string)

Memory threshold for HISAT2 index building. When available process memory meets or exceeds this value, splice sites and exons are used to build a splice-aware index. Use false to disable splice-aware indexing.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

hisat2 Documentation

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.

doi: 10.1038/s41587-019-0201-4License: MIT
Authors