Description

Perl script (generateMap.pl) generates the mappability of a genome given a certain size of reads, for input to hmmcopy mapcounter. Takes a very long time on large genomes, is not parallelised at all.

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

bigwig ()

versions ()

Tools

hmmcopy Documentation

C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy

License: GPL v3
Authors