Description

Retrieves one or more complete sequences or subsequences from a sequence file using its pre-built SSI index. The esl-sfetch utility is an Easel miniapp bundled with the HMMER package. This module only fetches: the SSI index must be produced beforehand by the sibling module hmmer/eslsfetchindex. The keyfile is used to fetch the named sequences (-f), or, with ext.args = '-C', parsed as a subsequence coordinate file (-Cf) to extract and rename subsequences.

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Output

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Tools

hmmer Documentation

Biosequence analysis using profile hidden Markov models. The esl-sfetch utility is an Easel miniapp bundled with the HMMER package, used here to retrieve sequences or subsequences from an SSI-indexed sequence file.

https://github.com/EddyRivasLab/hmmerdoi: 10.1371/journal.pcbi.1002195License: BSD-3-Clause
Authors