modules/
hmmer_eslsfetchindex

Builds an SSI (sequence/subsequence index) file for a sequence file, using the esl-sfetch utility, an Easel miniapp bundled with the HMMER package (esl-sfetch --index). The resulting index lets esl-sfetch retrieve sequences from the file in constant time. This module is the indexing half of a pair: hmmer/eslsfetchindex builds the SSI index, hmmer/eslsfetch consumes it (or an equivalent one) to fetch sequences or subsequences.

hmmer easel indexing sequence retrieval ssi index fasta