Description

create an hmm profile from a multiple sequence alignment

Input

Name
Description
Pattern

0 ()

1 ()

mxfile (file)

read substitution score matrix, for use when building profiles from single sequences (--singlemx option)

*

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

hmmer Documentation

Biosequence analysis using profile hidden Markov models

https://github.com/EddyRivasLab/hmmerdoi: 10.1371/journal.pcbi.1002195License: BSD
Authors