Description

Create a tag directory with the HOMER suite

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

Output

Name
Description
Pattern

tagdir ()

taginfo ()

versions ()

Tools

homer Documentation

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.

doi: 10.1016/j.molcel.2010.05.004.License: GPL-3.0-or-later

samtools Documentation

SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA.

doi: 10.1093/bioinformatics/btp352License: MIT

DESeq2 Documentation

Differential gene expression analysis based on the negative binomial distribution

https://github.com/mikelove/DESeq2doi: 10.18129/B9.bioc.DESeq2License: LGPL-3.0-or-later

edgeR Documentation

Empirical Analysis of Digital Gene Expression Data in R

https://git.bioconductor.org/packages/edgeRdoi: 10.18129/B9.bioc.edgeRLicense: GPL >=2
Authors