Description

Multi-purpose module to compress, decompress and index files using bgzip and tabix.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

action (string)

Action to perform, either compress or decompress

make_index (boolean)

Whether to create a tabix index for the output file; only used if action is compress

out_ext (string)

Output file extension without .gz suffix (for example vcf)

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

htslib Documentation

C library for high-throughput sequencing data formats.

https://github.com/samtools/htslibdoi: 10.1093/gigascience/giab007License: MIT
Authors