Description

ichorCNA is an R package for calculating copy number alteration from (low-pass) whole genome sequencing, particularly for use in cell-free DNA

Input

Name
Description
Pattern

0 ()

1 ()

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0 ()

0 ()

0 ()

0 ()

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Output

Name
Description
Pattern

rdata ()

seg ()

cna_seg ()

seg_txt ()

corrected_depth ()

ichorcna_params ()

plots ()

genome_plot ()

versions ()

Tools

ichorcna Documentation

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

https://github.com/broadinstitute/ichorCNAdoi: 10.1038/s41467-017-00965-yLicense: GPL v3
Authors