Description

Measures reproducibility of ChIP-seq, ATAC-seq peaks using IDR (Irreproducible Discovery Rate)

Input

Name
Description
Pattern

peaks (list)

BED, narrowPeak or broadPeak files of replicates

*

peak_type (string)

Type of peak file

{narrowPeak,broadPeak,bed}

prefix (string)

Prefix for output files

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

idr Documentation

The IDR (Irreproducible Discovery Rate) framework is a unified approach to measure the reproducibility of findings identified from replicate experiments and provide highly stable thresholds based on reproducibility.

https://github.com/kundajelab/idrLicense: GPL v2
Authors