Description

Ilastik is a tool that utilizes machine learning algorithms to classify pixels, segment, track and count cells in images. Ilastik contains a graphical user interface to interactively label pixels. However, this nextflow module will implement the --headless mode, to apply pixel classification using a pre-trained .ilp file on an input image.

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Output

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Tools

ilastik Documentation

Ilastik is a user friendly tool that enables pixel classification, segmentation and analysis.

https://github.com/ilastik/ilastik
Authors