Description

Ilastik is a tool that utilizes machine learning algorithms to classify pixels, segment, track and count cells in images. Ilastik contains a graphical user interface to interactively label pixels. However, this nextflow module will implement the --headless mode, to apply pixel classification using a pre-trained .ilp file on an input image.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

ilp (file)

Trained 'Boundary-based Segmentation with Multicut' .ilp project file

*.{ilp}

Output

Name
Description
Pattern

0 ()

0 ()

Tools

ilastik Documentation

Ilastik is a user friendly tool that enables pixel classification, segmentation and analysis.

https://github.com/ilastik/ilastik
Authors