Description

inStrain is python program for analysis of co-occurring genome populations from metagenomes that allows highly accurate genome comparisons, analysis of coverage, microdiversity, and linkage, and sensitive SNP detection with gene localization and synonymous non-synonymous identification

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

0 ()

0 ()

Output

Name
Description
Pattern

profile ()

snvs ()

gene_info ()

genome_info ()

linkage ()

mapping_info ()

scaffold_info ()

versions ()

Tools

instrain Documentation

Calculation of strain-level metrics

https://github.com/MrOlm/instraindoi: 10.1038/s41587-020-00797-0License: MIT
Authors