Description

Produces a Newick format phylogeny from a multiple sequence alignment using the maxium likelihood algorithm. Capable of bacterial genome size alignments.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Output

Name
Description
Pattern

phylogeny ()

report ()

mldist ()

lmap_svg ()

lmap_eps ()

lmap_quartetlh ()

sitefreq_out ()

bootstrap ()

state ()

contree ()

nex ()

splits ()

suptree ()

alninfo ()

partlh ()

siteprob ()

sitelh ()

treels ()

rate ()

mlrate ()

exch_matrix ()

log ()

versions ()

Tools

iqtree Documentation

Efficient phylogenomic software by maximum likelihood.

https://github.com/iqtree/iqtree2doi: 10.1093/molbev/msaa015License: GPL v2-or-later
Authors