Description

Quantification of transposable elements expression in scRNA-seq

Input

Name
Description
Pattern

0 ()

1 ()

genome (string)

Genome assembly symbol. Not used when bed file is provided. In this case, it can be any value or an empty string.

bed (file)

Bed file of repeats genomic coordinates (optional).

*.bed

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

irescue Documentation

IRescue is a tool for uncertainty-aware quantification of transposable elements expression in scRNA-seq

https://github.com/bodegalab/irescuedoi: 10.1093/nar/gkae793License: MIT
Authors