Description

Computes equivalence classes for reads and quantifies abundances

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

gtf (file)

Optional gtf file for translation of transcripts into genomic coordinates.

*.gtf

chromosomes (file)

Optional tab separated file with chromosome names and lengths.

*.tsv

fragment_length (integer)

For single-end mode only, the estimated average fragment length.

fragment_length_sd (integer)

For single-end mode only, the estimated standard deviation of the fragment length.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

kallisto Documentation

Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.

https://github.com/pachterlab/kallistodoi: 10.1038/nbt.3519License: BSD_2_clause
Authors