Description

Generate taxonomic profile from search results

Input

Name
Description
Pattern

0 ()

1 ()

db (directory)

Database directory containing taxdump files and taxid file

level (string)

Taxonomic rank to generate profile at (e.g. "species", "strain", "assembly")

Output

Name
Description
Pattern

0 ()

0 ()

Tools

kmcp Documentation

Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping

https://github.com/shenwei356/kmcpdoi: 10.1093/bioinformatics/btac845License: MIT
Authors