Description

KmerGenie estimates the best k-mer length for genome de novo assembly

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Tools

kmergenie Documentation

KmerGenie estimates the best k-mer length for genome de novo assembly. Given a set of reads, KmerGenie first computes the k-mer abundance histogram for many values of k. Then, for each value of k, it predicts the number of distinct genomic k-mers in the dataset, and returns the k-mer length which maximizes this number.

https://github.com/movingpictures83/KMerGeniedoi: 10.1093/bioinformatics/btt310License: MIT License
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