Description

Classifies metagenomic sequence data

Input

Name
Description
Pattern

0 ()

1 ()

db (directory)

Kraken2 database

save_output_fastqs (string)

If true, optional commands are added to save classified and unclassified reads as fastq files

save_reads_assignment (string)

If true, an optional command is added to save a file reporting the taxonomic classification of each input read

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

kraken2 Documentation

Kraken2 is a taxonomic sequence classifier that assigns taxonomic labels to sequence reads

doi: 10.1186/s13059-019-1891-0License: MIT
nf-core pipelines with this module
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Authors