Description

Run linkage disequilibrium (LD) pruning with linkage disequilibrium-adjusted kinship (LDAK) to create a thinned predictor list for weighted kinship workflows

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

window_prune (float)

Correlation squared (r²) threshold passed to LDAK --window-prune (for example, 0.98)

window_kb (integer)

Window size in kilobases passed to LDAK --window-kb (for example, 100)

Output

Name
Description
Pattern

0 ()

0 ()

Tools

ldak6 Documentation

LDAK toolset for kinship, heritability, and association analyses

Authors