Description

Uses Liftoff to accurately map annotations in GFF or GTF between assemblies of the same, or closely-related species

Input

Name
Description
Pattern

0 ()

1 ()

ref_fa (file)

Reference assembly in fasta format (can be gzipped)

*.{fa,fa.gz,fasta,fasta.gz,fas,fas.gz,fsa,fsa.gz}

ref_annotation (file)

Reference assembly annotations in gtf or gff3 format

*.{gtf,gff3}

ref_db (file)

Name of feature database; if not specified, the -g argument must be provided and a database will be built automatically

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

liftoff Documentation

Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species

doi: 10.1093/bioinformatics/bty191License: GPL v3 License
Authors