Description

Identifies LTR retrotransposons using LTR_retriever

Input

Name
Description
Pattern

0 ()

1 ()

harvest (file)

LTR-RT candidates from GenomeTools ltrharvest in the old tabular format

*.tabout

finder (file)

LTR-RT candidates from LTR_FINDER

*.scn

mgescan (file)

LTR-RT candidates from MGEScan_LTR

*.out

non_tgca (file)

Non-canonical LTR-RT candidates from GenomeTools ltrharvest in the old tabular format

*.tabout

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

LTR_retriever Documentation

Sensitive and accurate identification of LTR retrotransposons

doi: 10.1104/pp.17.01310License: GPL v3
Authors