Description

Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. This script reformats inversions into single inverted sequence junctions which was the format used in Manta versions <= 1.4.0.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

Output

Name
Description
Pattern

vcf ()

tbi ()

versions ()

Tools

manta Documentation

Structural variant and indel caller for mapped sequencing data

https://github.com/Illumina/mantadoi: 10.1093/bioinformatics/btv710License: GPL v3
Authors