Description

Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs.

Input

Name
Description
Pattern

0 ()

1 ()

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4 ()

0 ()

1 ()

0 ()

1 ()

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Output

Name
Description
Pattern

candidate_small_indels_vcf ()

candidate_small_indels_vcf_tbi ()

candidate_sv_vcf ()

candidate_sv_vcf_tbi ()

diploid_sv_vcf ()

diploid_sv_vcf_tbi ()

versions ()

Tools

manta Documentation

Structural variant and indel caller for mapped sequencing data

https://github.com/Illumina/mantadoi: 10.1093/bioinformatics/btv710License: GPL v3
Authors