Description

Computational framework for tracking and quantifying DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

Output

Name
Description
Pattern

runtime_log ()

fragmisincorporation_plot ()

length_plot ()

misincorporation ()

lgdistribution ()

dnacomp ()

stats_out_mcmc_hist ()

stats_out_mcmc_iter ()

stats_out_mcmc_trace ()

stats_out_mcmc_iter_summ_stat ()

stats_out_mcmc_post_pred ()

stats_out_mcmc_correct_prob ()

dnacomp_genome ()

rescaled ()

pctot_freq ()

pgtoa_freq ()

fasta ()

folder ()

versions ()

Tools

mapdamage2 Documentation

Tracking and quantifying damage patterns in ancient DNA sequences

https://github.com/ginolhac/mapDamagedoi: 10.1093/bioinformatics/btt193License: MIT
Authors