Description

Mcquant extracts single-cell data given a multi-channel image and a segmentation mask.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

Output

Name
Description
Pattern

csv ()

versions ()

Tools

mcquant Documentation

Module for single-cell data extraction given a segmentation mask and multi-channel image. The CSV structure is aligned with histoCAT output.

https://github.com/labsyspharm/quantificationdoi: 10.1038/s41592-021-01308-yLicense: MIT
Authors