Description

Performs taxonomic profiling of long metagenomic reads against the melon database

Input

Name
Description
Pattern

0 ()

1 ()

database (directory)

Melon database.

k2_db (directory)

Kraken2 database for pre-filtering of non-prokaryotic reads (needs to include at least human and fungi).

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

melon Documentation

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

doi: 10.1186/s13059-024-03363-yLicense: MIT
Authors