Description

Compare k-mer frequency in reads and assembly to devise the metrics K and QV

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

0 ()

0 ()

Output

Name
Description
Pattern

hist ()

log_stderr ()

versions ()

Tools

merfin Documentation

Merfin (k-mer based finishing tool) is a suite of subtools to variant filtering, assembly evaluation and polishing via k-mer validation. The subtool -hist estimates the QV (quality value of Merqury) for each scaffold/contig and genome-wide averages. In addition, Merfin produces a QV* estimate, which accounts also for kmers that are seen in excess with respect to their expected multiplicity predicted from the reads.

doi: 10.1038/s41592-022-01445-yLicense: Apache-2.0
Authors