Description
k-mer based assembly evaluation.
Output
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
versions
(file)
File containing software versions
versions.yml
assembly_only_kmers_bed
(file)
The positions of the k-mers found only in an assembly for further investigation in .bed
*_only.bed
assembly_only_kmers_wig
(file)
The positions of the k-mers found only in an assembly for further investigation in .wig
*_only.wig
stats
(file)
*.completeness.stats
dist_hist
(file)
*.dist_only.hist
spectra_cn_fl_png
(file)
Unstacked copy number spectra filled plot in PNG format
*.spectra-cn.fl.png
spectra_cn_ln_png
(file)
Unstacked copy number spectra line plot in PNG format
*.spectra-cn.ln.png
spectra_cn_st_png
(file)
Stacked copy number spectra line plot in PNG format
*.spectra-cn.st.png
spectra_cn_hist
(file)
Copy number spectra histogram
*.spectra-cn.hist
spectra_asm_fl_png
(file)
Unstacked assembly spectra filled plot in PNG format
*.spectra-asm.fl.png
spectra_asm_ln_png
(file)
Unstacked assembly spectra line plot in PNG format
*.spectra-asm.ln.png
spectra_asm_st_png
(file)
Stacked assembly spectra line plot in PNG format
*.spectra-asm.st.png
spectra_asm_hist
(file)
Assembly spectra histogram
*.spectra-asm.hist
assembly_qv
(file)
Assembly consensus quality estimation
*.qv
scaffold_qv
(file)
Scaffold consensus quality estimation
*.qv
read_ploidy
(file)
Ploidy estimate from read k-mer database
*.hist.ploidy