Description

Builds a database for classification with metabuli from FASTA files and a taxonomy

Input

Name
Description
Pattern

0 ()

1 ()

taxonomy_names (file)

File describing individual members of a taxonomic tree in NCBI nodes.dmp format

taxonomy_nodes (file)

File describing parent-child relationships of a taxonomic tree in NCBI nodes.dmp format

taxonomy_merged (file)

Optional input to map old/deprecated TaxID to new ones

accession2taxid (directory)

TSV file (with no header) of first column with mapping accession (from first part of each fasta entry) and second column the corresponding TaxID

cds_info (file)

List of files to cds files

Output

Name
Description
Pattern

0 ()

0 ()

Tools

metabuli Documentation

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid

doi: 10.1101/2023.05.31.543018License: GPL v3
Authors