Description

Metacache query command for taxonomic classification

Input

Name
Description
Pattern

0 ()

1 ()

db (directory)

A MetaCache database contains taxonomic information and min-hash signatures of reference sequences (complete genomes, scaffolds, contigs, ...).

do_abundances (boolean)

Flag indicating whether to produce the abundance table.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

metacache Documentation

MetaCache is a classification system for mapping genomic sequences (short reads, long reads, contigs, ...) from metagenomic samples to their most likely taxon of origin.

https://github.com/muellan/metacachedoi: 10.1093/bioinformatics/btx520License: GPL-3.0 license
Authors