modules/
metaphlan3_metaphlan3

MetaPhlAn is a tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data.

metagenomics classification fastq bam fasta

https://github.com/nf-core/modules/tree/master/modules/nf-core/metaphlan3/metaphlan3

Description

MetaPhlAn is a tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data.

Input

Name

Description

Pattern

`0` ()

`1` ()

`metaphlan_db` (file)

Directory containing pre-downloaded and uncompressed MetaPhlAn3 database downloaded from: http://cmprod1.cibio.unitn.it/biobakery3/metaphlan_databases/. Note that you will also need to specify --index and the database version name (e.g. 'mpa_v31_CHOCOPhlAn_201901') in your module.conf ext.args for METAPHLAN3_METAPHLAN3!

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