Description

MetaPhlAn is a tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data.

Input

Name
Description
Pattern

0 ()

1 ()

metaphlan_db_latest (file)

Directory containing pre-downloaded and uncompressed MetaPhlAn database downloaded from: http://cmprod1.cibio.unitn.it/biobakery4/metaphlan_databases/. Note that you will also need to specify --index and the database version name (e.g. 'mpa_vJan21_TOY_CHOCOPhlAnSGB_202103') in your module.conf ext.args for METAPHLAN_METAPHLAN!

*/

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

metaphlan Documentation

Identify clades (phyla to species) present in the metagenome obtained from a microbiome sample and their relative abundance

doi: 10.1038/s41587-023-01688-wLicense: MIT License
Authors