Description

Align fastq reads to a fasta reference using minibwa

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

sort_bam (boolean)

use samtools sort (true) or samtools view (false)

true or false

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

minibwa Documentation

Aligning short and accurate long reads to a reference genome, a reimplementation of bwa-mem.

License: GPL-2.0-or-later

samtools Documentation

Tools for dealing with SAM, BAM and CRAM files

doi: 10.1093/bioinformatics/btp352License: MIT
Authors