Description

Download a mitochondrial genome to be used as reference for MitoHiFi.

NOTE: An optional NCBI API key can be supplied to MITOHIFI_FINDMITOREFERENCE. This should be set using Nextflow's secrets functionality:

nextflow secrets set NCBI_API_KEY <key>

See https://www.nextflow.io/docs/latest/secrets.html for more information.

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

findMitoReference.py Documentation

Fetch mitochondrial genome in Fasta and Genbank format from NCBI

doi: 10.1101/2022.12.23.521667License: MIT
nf-core pipelines with this module
genomeassembly
Authors