Description

Produce a per-read per-position table of base modification calls (pass/fail/filtered, with the called base) from a modBAM using the same thresholding algorithm as modkit pileup. Complementary to modkit extract full, which emits raw probabilities: extract calls emits the thresholded categorical decision per site per read.

Input

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Output

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Tools

modkit Documentation

A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.

https://github.com/nanoporetech/modkitLicense: Oxford Nanopore Technologies PLC. Public License Version 1.0
Authors