Description

Transform the probabilities from the MM/ML tags in a modBAM into a tab-separated per-read-per-position table. Emits one row for every modified-base probability call in every read — useful for downstream custom filtering, plotting, and ML training. Optionally BGZF-compressed via --bgzf in ext.args.

Input

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Output

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Tools

modkit Documentation

A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.

https://github.com/nanoporetech/modkitLicense: Oxford Nanopore Technologies PLC. Public License Version 1.0
Authors